Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ygeVDNA-binding transcriptional regulator. (614 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.842
xdhA
Xanthine dehydrogenase subunit XdhA.
 
     0.571
xdhB
Xanthine dehydrogenase subunit XdhB.
 
     0.565
xdhC
Xanthine dehydrogenase.
       0.495
ALP40251.1
Hypothetical protein.
  
    0.488
gltB
Glutamate synthase subunit alpha.
      
 0.473
ALP40165.1
Hypothetical protein.
       0.465
yccA
SecY stabilizing membrane protein; Belongs to the BI1 family.
   
    0.416
ALP42115.1
Hypothetical protein.
     
 0.409
arcB
Aerobic respiration control sensor protein ArcB.
     
 0.406
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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