Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP40205.1Hypothetical protein. (180 aa)    
Predicted Functional Partners:
ALP40179.1
Cytochrome c oxidase, cbb3-type, CcoQ subunit.
  
     0.748
glnL
Nitrogen regulation protein NR(II).
       0.726
glnG
Fis family nitrogen metabolism transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
       0.707
WL1483_86
Hypothetical protein.
  
     0.602
glnA
Glutamine synthetase, type I.
       0.554
ALP40581.1
Hypothetical protein.
  
    0.504
ALP39980.1
Cytochrome oxidase maturation protein, cbb3-type.
  
     0.478
ALP39740.1
Hypothetical protein.
  
    0.463
exeN
Type II secretion system protein N.
  
     0.456
ALP41546.1
Hypothetical protein.
  
     0.451
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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