Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WL1483_86Hypothetical protein. (83 aa)    
Predicted Functional Partners:
ALP42298.1
Zn-ribbon-containing protein.
  
     0.767
ALP43497.1
Hypothetical protein.
       0.758
ALP42451.1
Hypothetical protein.
  
     0.753
psd
Phosphatidylserine decarboxylase.
       0.747
psd-2
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
       0.747
ALP39740.1
Hypothetical protein.
  
     0.735
ALP43315.1
Type IV pilus assembly TapZ.
  
     0.732
ALP43745.1
Hypothetical protein.
  
     0.731
ALP42011.1
Hypothetical protein.
  
     0.718
ilvM
Acetolactate synthase II small subunit.
  
     0.718
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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