Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lcrVVirulence-associated V antigen. (318 aa)    
Predicted Functional Partners:
lcrH
Low calcium response locus protein H.
  
  
 0.970
ALP42888.1
Hypothetical protein.
  
  
 0.949
yopD
AopD protein.
  
  
 0.946
ALP42129.1
Hypothetical protein.
  
  
 0.944
sycN
Molecular chaperone.
  
    0.923
yopN
Type III secretion protein.
  
  
 0.908
yscX
Yop proteins translocation protein X.
  
    0.867
lcrD
AscV protein.
  
  
 0.857
yscI
Preprotein translocase I.
   
  
 0.838
yscO
Type III secretion system translocation protein.
  
    0.831
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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