STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcrVVirulence-associated V antigen. (318 aa)    
Predicted Functional Partners:
lcrH
Low calcium response locus protein H.
  
  
 0.951
ALP42129.1
Hypothetical protein.
  
  
 0.933
ALP42888.1
Hypothetical protein.
  
  
 0.924
yopD
AopD protein.
  
  
 0.922
sycN
Molecular chaperone.
  
    0.905
yopN
Type III secretion protein.
  
  
 0.887
yscX
Yop proteins translocation protein X.
  
    0.848
lcrD
AscV protein.
  
  
 0.835
yscO
Type III secretion system translocation protein.
  
  
 0.795
lcrR
Low calcium response locus protein R.
  
    0.776
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.