Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dgaF2-dehydro-3-deoxyphosphooctonate aldolase. (246 aa)    
Predicted Functional Partners:
dgaE
L-seryl-tRNA selenium transferase.
 
    0.975
ALP43738.1
Dihydroorotase.
 
    0.955
ALP42000.1
Membrane protein.
 
     0.949
ALP42912.1
Membrane protein.
 
     0.946
ALP39815.1
Transcriptional regulator.
 
     0.918
ALP40188.1
Cytoplasmic protein.
 
     0.918
ALP40261.1
Transcriptional regulator.
 
     0.918
ALP42168.1
Transcription antiterminator BglG.
 
     0.779
ALP39591.1
L-seryl-tRNA selenium transferase.
 
    0.628
ALP40965.1
Gfo/Idh/MocA family oxidoreductase.
  
     0.410
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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