Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yscFType III secretion apparatus needle protein YscF. (88 aa)    
Predicted Functional Partners:
yscG
Type 3 secretion protein AscG.
  
 
 0.995
yscI
Preprotein translocase I.
  
  
 0.976
yscJ
Preproteins translocase J.
  
  
 0.932
ALP40974.1
Type III secretion system needle protein SsaG.
     
  0.900
yscD
Type III secretion apparatus protein, YscD/HrpQ family.
  
    0.895
yscL
Type III secretion apparatus protein, HrpE/YscL family.
  
  
 0.886
yscK
Type III secretion cytoplasmic protein (YscK).
  
  
 0.855
yscH
Yop proteins translocation protein H.
    
  0.848
yscC
Type III secretion outer membrane pore, YscC/HrcC family.
  
 
 0.844
ALP43385.1
ExsD protein.
  
  
 0.830
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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