STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL1483_98Type III secretion protein. (127 aa)    
Predicted Functional Partners:
ALP41103.1
Protein EseD.
  
  
 0.960
ALP40730.1
Hypothetical protein.
  
    0.918
ALP43411.1
Secretion protein EspA.
  
    0.917
ALP42573.1
Secretion protein EspA.
  
    0.915
ALP40669.1
Type III secretion protein.
  
  
 0.896
ALP42191.1
Type III secretion protein.
  
    0.795
ALP42829.1
Hypothetical protein.
  
  
 0.793
ALP40936.1
Hypothetical protein.
       0.773
ALP43773.1
Hypothetical protein.
       0.773
WL1483_72
Hypothetical protein.
  
  
 0.746
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.