Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BG28_08055Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)    
Predicted Functional Partners:
BG28_07280
copC domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.814
BG28_04280
Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
BG28_11865
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
BG28_14425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.643
BG28_04260
Cytochrome C oxidase subunit IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.605
BG28_13675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.518
BG28_00490
Cytochrome C biogenesis protein ResB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
BG28_02885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
BG28_04285
Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.474
BG28_09955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
Your Current Organism:
Nesterenkonia sp. AN1
NCBI taxonomy Id: 652017
Other names: N. sp. AN1
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