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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU42695.1PFAM: regulatory protein TetR; KEGG: rle:RL2982 TetR family transcriptional regulator. (207 aa)    
Predicted Functional Partners:
ADU42697.1
PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rce:RC1_3069 xanthine dehydrogenase YagS FAD-binding subunit,putative.
       0.510
ADU42696.1
PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: rce:RC1_3068 oxidoreductase with iron-sulfur subunit, putative.
     
 0.480
ADU42698.1
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: rce:RC1_3070 xanthine dehydrogenase YagR molybdenum-binding subunit, putative.
       0.479
Your Current Organism:
Rhodopseudomonas palustris DX1
NCBI taxonomy Id: 652103
Other names: R. palustris DX-1, Rhodopseudomonas palustris DX-1, Rhodopseudomonas palustris str. DX-1, Rhodopseudomonas palustris strain DX-1
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