STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU43280.1PFAM: NLP/P60 protein; KEGG: bbt:BBta_7040 NLP/P60 family protein. (285 aa)    
Predicted Functional Partners:
ADU43281.1
KEGG: nha:Nham_0384 leucyl aminopeptidase; manually curated; PFAM: peptidase M17 leucyl aminopeptidase domain protein; Belongs to the peptidase M17 family.
     
 0.873
ADU46452.1
PFAM: protein of unknown function DUF214; KEGG: bja:blr1391 cell division protein.
 
 
 
 0.804
ADU43282.1
KEGG: nha:Nham_0385 tetratricopeptide TPR_2.
  
   0.691
ADU42079.1
KEGG: nha:Nham_0406 hypothetical protein.
  
     0.562
ADU42111.1
Carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: bja:blr0434 carboxy-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
    
 
 0.559
ADU42308.1
TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: afr:AFE_0524 carboxy-terminal peptidase; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
    
 
 0.559
ADU46256.1
KEGG: bbt:BBta_0942 hypothetical protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
   
 
 0.538
ADU44421.1
KEGG: bja:blr4588 hypothetical protein; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region.
  
   
 0.534
ADU45775.1
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: nha:Nham_1314 mandelate racemase/muconate lactonizing enzyme.
 
  
 0.523
ADU45178.1
KEGG: nha:Nham_1422 gene transfer agent (GTA) like protein.
  
 
 0.507
Your Current Organism:
Rhodopseudomonas palustris DX1
NCBI taxonomy Id: 652103
Other names: R. palustris DX-1, Rhodopseudomonas palustris DX-1, Rhodopseudomonas palustris str. DX-1, Rhodopseudomonas palustris strain DX-1
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