STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU43280.1PFAM: NLP/P60 protein; KEGG: bbt:BBta_7040 NLP/P60 family protein. (285 aa)    
Predicted Functional Partners:
ADU43281.1
KEGG: nha:Nham_0384 leucyl aminopeptidase; manually curated; PFAM: peptidase M17 leucyl aminopeptidase domain protein; Belongs to the peptidase M17 family.
       0.886
ADU43282.1
KEGG: nha:Nham_0385 tetratricopeptide TPR_2.
  
 
 0.643
ADU42079.1
KEGG: nha:Nham_0406 hypothetical protein.
  
     0.562
ADU45775.1
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: nha:Nham_1314 mandelate racemase/muconate lactonizing enzyme.
 
  
 0.527
ADU44421.1
KEGG: bja:blr4588 hypothetical protein; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region.
  
     0.515
ADU46489.1
KEGG: nha:Nham_0218 2'-deoxycytidine 5'-triphosphate deaminase.
  
     0.503
ADU42831.1
PFAM: Protein of unknown function DUF2007; KEGG: nwi:Nwi_2591 hypothetical protein.
 
     0.499
ADU46456.1
KEGG: nha:Nham_0664 hypothetical protein.
 
  
 0.481
murD
UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
   
 0.466
ADU41674.1
PFAM: Heparinase II/III family protein; KEGG: bja:blr0580 hypothetical protein.
  
     0.448
Your Current Organism:
Rhodopseudomonas palustris DX1
NCBI taxonomy Id: 652103
Other names: R. palustris DX-1, Rhodopseudomonas palustris DX-1, Rhodopseudomonas palustris str. DX-1, Rhodopseudomonas palustris strain DX-1
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