A0A2C9JUK6 protein (Biomphalaria glabrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2C9JUK6

PX domain-containing protein. (438 aa)

Predicted Functional Partners:

A0A2C9K743

0.988

A0A2C9JQD0

0.947

A0A2C9JSC3

0.909

A0A2C9JND1

0.907

A0A2C9L295

0.904

A0A2C9LDH6

0.802

A0A2C9LP91

0.802

A0A2C9JWV1

0.749

A0A2C9KTI3

0.749

A0A2C9M2D6

0.749

Your Current Organism:

Biomphalaria glabrata

NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9JND1	A0A2C9JQD0	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A2C9JND1	A0A2C9JSC3	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
A0A2C9JND1	A0A2C9JUK6	Uncharacterized protein.	PX domain-containing protein.	0.907
A0A2C9JND1	A0A2C9JWV1	Uncharacterized protein.	PX domain-containing protein.	0.634
A0A2C9JND1	A0A2C9K743	Uncharacterized protein.	PX domain-containing protein.	0.907
A0A2C9JND1	A0A2C9KTI3	Uncharacterized protein.	PX domain-containing protein.	0.512
A0A2C9JND1	A0A2C9L295	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.999
A0A2C9JND1	A0A2C9M2D6	Uncharacterized protein.	Vps5 domain-containing protein.	0.634
A0A2C9JQD0	A0A2C9JND1	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A2C9JQD0	A0A2C9JSC3	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.704
A0A2C9JQD0	A0A2C9JUK6	Uncharacterized protein.	PX domain-containing protein.	0.947
A0A2C9JQD0	A0A2C9K743	Uncharacterized protein.	PX domain-containing protein.	0.947
A0A2C9JQD0	A0A2C9L295	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.620
A0A2C9JQD0	A0A2C9LDH6	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.934
A0A2C9JQD0	A0A2C9LP91	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.934
A0A2C9JSC3	A0A2C9JND1	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.999
A0A2C9JSC3	A0A2C9JQD0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.704
A0A2C9JSC3	A0A2C9JUK6	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.909
A0A2C9JSC3	A0A2C9JWV1	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.649
A0A2C9JSC3	A0A2C9K743	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.915