A0A2C9JUM8 protein (Biomphalaria glabrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2C9JUM8

Uncharacterized protein. (229 aa)

Predicted Functional Partners:

A0A2C9LSY0

0.892

A0A2C9L7K3

0.881

A0A2C9KZU4

0.840

A0A2C9LGR8

0.803

A0A2C9LHW9

0.801

A0A2C9K6E6

0.780

A0A2C9JYV7

0.750

A0A2C9JZV7

0.747

A0A2C9JH54

0.744

A0A2C9LMU9

0.652

Your Current Organism:

Biomphalaria glabrata

NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9JH54	A0A2C9JUM8	NUC153 domain-containing protein.	Uncharacterized protein.	0.744
A0A2C9JH54	A0A2C9JYV7	NUC153 domain-containing protein.	Brix domain-containing protein.	0.911
A0A2C9JH54	A0A2C9JZV7	NUC153 domain-containing protein.	NUC153 domain-containing protein.	0.976
A0A2C9JH54	A0A2C9K6E6	NUC153 domain-containing protein.	Uncharacterized protein.	0.931
A0A2C9JH54	A0A2C9KZU4	NUC153 domain-containing protein.	Uncharacterized protein.	0.999
A0A2C9JH54	A0A2C9L7K3	NUC153 domain-containing protein.	Uncharacterized protein.	0.936
A0A2C9JH54	A0A2C9LGR8	NUC153 domain-containing protein.	Uncharacterized protein.	0.798
A0A2C9JH54	A0A2C9LHW9	NUC153 domain-containing protein.	RRM domain-containing protein.	0.893
A0A2C9JH54	A0A2C9LMU9	NUC153 domain-containing protein.	Uncharacterized protein.	0.904
A0A2C9JH54	A0A2C9LSY0	NUC153 domain-containing protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.898
A0A2C9JUM8	A0A2C9JH54	Uncharacterized protein.	NUC153 domain-containing protein.	0.744
A0A2C9JUM8	A0A2C9JYV7	Uncharacterized protein.	Brix domain-containing protein.	0.750
A0A2C9JUM8	A0A2C9JZV7	Uncharacterized protein.	NUC153 domain-containing protein.	0.747
A0A2C9JUM8	A0A2C9K6E6	Uncharacterized protein.	Uncharacterized protein.	0.780
A0A2C9JUM8	A0A2C9KZU4	Uncharacterized protein.	Uncharacterized protein.	0.840
A0A2C9JUM8	A0A2C9L7K3	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A2C9JUM8	A0A2C9LGR8	Uncharacterized protein.	Uncharacterized protein.	0.803
A0A2C9JUM8	A0A2C9LHW9	Uncharacterized protein.	RRM domain-containing protein.	0.801
A0A2C9JUM8	A0A2C9LMU9	Uncharacterized protein.	Uncharacterized protein.	0.652
A0A2C9JUM8	A0A2C9LSY0	Uncharacterized protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.892