STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9KUS9tRNA pseudouridine synthase. (360 aa)    
Predicted Functional Partners:
A0A2C9JE22
39S mitochondrial ribosomal protein L17.
  
  
 0.872
A0A2C9L6G3
TruB_N domain-containing protein.
   
 0.847
A0A2C9JIN4
RPOLD domain-containing protein.
  
  
 0.820
A0A2C9K3V8
RPOLD domain-containing protein.
  
  
 0.820
A0A2C9K1D3
PUA domain-containing protein.
   
 0.765
A0A2C9LQY1
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.735
A0A2C9JZH1
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
  
 
 0.666
A0A2C9LMC1
J domain-containing protein.
      
 0.650
A0A2C9JC42
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.628
A0A2C9L7E3
WD_REPEATS_REGION domain-containing protein.
   
   0.625
Your Current Organism:
Biomphalaria glabrata
NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb
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