A0A2C9LM22 protein (Biomphalaria glabrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2C9LM22

Str_synth domain-containing protein. (274 aa)

Predicted Functional Partners:

A0A2C9LEY8

0.787

A0A2C9JVM8

0.686

A0A2C9KUD6

0.665

A0A2C9JE22

0.649

A0A2C9K6Y5

0.644

A0A2C9KJZ8

0.644

A0A2C9KSY7

0.641

A0A2C9L081

0.636

A0A2C9L490

0.636

A0A2C9JIN4

0.630

Your Current Organism:

Biomphalaria glabrata

NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9JE22	A0A2C9JIN4	39S mitochondrial ribosomal protein L17.	RPOLD domain-containing protein.	0.977
A0A2C9JE22	A0A2C9K6Y5	39S mitochondrial ribosomal protein L17.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.996
A0A2C9JE22	A0A2C9KJZ8	39S mitochondrial ribosomal protein L17.	S4 RNA-binding domain-containing protein.	0.995
A0A2C9JE22	A0A2C9KSY7	39S mitochondrial ribosomal protein L17.	Peptidylprolyl isomerase.	0.989
A0A2C9JE22	A0A2C9KUD6	39S mitochondrial ribosomal protein L17.	Uncharacterized protein.	0.999
A0A2C9JE22	A0A2C9L081	39S mitochondrial ribosomal protein L17.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.943
A0A2C9JE22	A0A2C9L490	39S mitochondrial ribosomal protein L17.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.943
A0A2C9JE22	A0A2C9LEY8	39S mitochondrial ribosomal protein L17.	S1 motif domain-containing protein.	0.785
A0A2C9JE22	A0A2C9LM22	39S mitochondrial ribosomal protein L17.	Str_synth domain-containing protein.	0.649
A0A2C9JIN4	A0A2C9JE22	RPOLD domain-containing protein.	39S mitochondrial ribosomal protein L17.	0.977
A0A2C9JIN4	A0A2C9K6Y5	RPOLD domain-containing protein.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.977
A0A2C9JIN4	A0A2C9KJZ8	RPOLD domain-containing protein.	S4 RNA-binding domain-containing protein.	0.977
A0A2C9JIN4	A0A2C9KSY7	RPOLD domain-containing protein.	Peptidylprolyl isomerase.	0.954
A0A2C9JIN4	A0A2C9KUD6	RPOLD domain-containing protein.	Uncharacterized protein.	0.968
A0A2C9JIN4	A0A2C9L081	RPOLD domain-containing protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.895
A0A2C9JIN4	A0A2C9L490	RPOLD domain-containing protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.895
A0A2C9JIN4	A0A2C9LEY8	RPOLD domain-containing protein.	S1 motif domain-containing protein.	0.994
A0A2C9JIN4	A0A2C9LM22	RPOLD domain-containing protein.	Str_synth domain-containing protein.	0.630
A0A2C9JVM8	A0A2C9LM22	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Str_synth domain-containing protein.	0.686
A0A2C9K6Y5	A0A2C9JE22	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	39S mitochondrial ribosomal protein L17.	0.996