STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT30472.1Competence protein ComEC. (701 aa)    
Predicted Functional Partners:
SDT21483.1
DNA processing protein.
 
  
 0.885
SDS00436.1
comF family protein.
 
  
 0.879
SDT65016.1
Magnesium chelatase family protein.
 
  
 0.760
SDT30498.1
GLPGLI family protein.
       0.723
SDT30447.1
DNA-binding transcriptional regulator, MerR family.
       0.636
SDS00387.1
PAS domain S-box-containing protein.
  
    0.567
SDS04039.1
Putative endonuclease; Belongs to the UPF0102 family.
  
    0.535
SDT67323.1
Type IV pilus assembly protein PilC.
   
  
 0.534
SDT66402.1
Exonuclease RecJ.
 
   
 0.532
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.523
Your Current Organism:
Mucilaginibacter mallensis
NCBI taxonomy Id: 652787
Other names: LMG 25360, LMG:25360, M. mallensis, Mucilaginibacter mallensis Mannisto et al. 2010, Mucilaginibacter sp. MP1X4, strain MP1X4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.