Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDT64407.1 | SDT64422.1 | SAMN05216490_4546 | SAMN05216490_4547 | Phosphoesterase RecJ domain-containing protein. | FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.731 |
SDT64407.1 | SDT64434.1 | SAMN05216490_4546 | SAMN05216490_4548 | Phosphoesterase RecJ domain-containing protein. | FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.606 |
SDT64407.1 | SDT64451.1 | SAMN05216490_4546 | SAMN05216490_4549 | Phosphoesterase RecJ domain-containing protein. | TatD DNase family protein. | 0.619 |
SDT64407.1 | SDT64461.1 | SAMN05216490_4546 | SAMN05216490_4550 | Phosphoesterase RecJ domain-containing protein. | L-asparaginase. | 0.460 |
SDT64422.1 | SDT64407.1 | SAMN05216490_4547 | SAMN05216490_4546 | FKBP-type peptidyl-prolyl cis-trans isomerase. | Phosphoesterase RecJ domain-containing protein. | 0.731 |
SDT64422.1 | SDT64434.1 | SAMN05216490_4547 | SAMN05216490_4548 | FKBP-type peptidyl-prolyl cis-trans isomerase. | FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.676 |
SDT64422.1 | SDT64451.1 | SAMN05216490_4547 | SAMN05216490_4549 | FKBP-type peptidyl-prolyl cis-trans isomerase. | TatD DNase family protein. | 0.541 |
SDT64422.1 | SDT64461.1 | SAMN05216490_4547 | SAMN05216490_4550 | FKBP-type peptidyl-prolyl cis-trans isomerase. | L-asparaginase. | 0.437 |
SDT64434.1 | SDT64407.1 | SAMN05216490_4548 | SAMN05216490_4546 | FKBP-type peptidyl-prolyl cis-trans isomerase. | Phosphoesterase RecJ domain-containing protein. | 0.606 |
SDT64434.1 | SDT64422.1 | SAMN05216490_4548 | SAMN05216490_4547 | FKBP-type peptidyl-prolyl cis-trans isomerase. | FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.676 |
SDT64434.1 | SDT64451.1 | SAMN05216490_4548 | SAMN05216490_4549 | FKBP-type peptidyl-prolyl cis-trans isomerase. | TatD DNase family protein. | 0.651 |
SDT64434.1 | SDT64461.1 | SAMN05216490_4548 | SAMN05216490_4550 | FKBP-type peptidyl-prolyl cis-trans isomerase. | L-asparaginase. | 0.528 |
SDT64451.1 | SDT64407.1 | SAMN05216490_4549 | SAMN05216490_4546 | TatD DNase family protein. | Phosphoesterase RecJ domain-containing protein. | 0.619 |
SDT64451.1 | SDT64422.1 | SAMN05216490_4549 | SAMN05216490_4547 | TatD DNase family protein. | FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.541 |
SDT64451.1 | SDT64434.1 | SAMN05216490_4549 | SAMN05216490_4548 | TatD DNase family protein. | FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.651 |
SDT64451.1 | SDT64461.1 | SAMN05216490_4549 | SAMN05216490_4550 | TatD DNase family protein. | L-asparaginase. | 0.769 |
SDT64451.1 | gltX | SAMN05216490_4549 | SAMN05216490_3824 | TatD DNase family protein. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.442 |
SDT64451.1 | lepA | SAMN05216490_4549 | SAMN05216490_1770 | TatD DNase family protein. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.457 |
SDT64451.1 | map | SAMN05216490_4549 | SAMN05216490_3714 | TatD DNase family protein. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.423 |
SDT64451.1 | metG | SAMN05216490_4549 | SAMN05216490_4285 | TatD DNase family protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.451 |
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