STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT68461.1Hypothetical protein. (542 aa)    
Predicted Functional Partners:
SDT45733.1
Signal transduction histidine kinase.
  
 0.763
SDS70250.1
LysM repeat-containing protein.
  
 
 
 0.640
SDS76301.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.595
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.568
SDT61990.1
Topoisomerase-4 subunit B.
    
 
 0.568
SDS28040.1
Hypothetical protein.
  
     0.543
SDR86861.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.521
SDT69802.1
WD40-like Beta Propeller Repeat.
  
 
   0.520
SDS00387.1
PAS domain S-box-containing protein.
    
 0.519
SDS01216.1
Membrane-bound lytic murein transglycosylase D.
   
 
 0.506
Your Current Organism:
Mucilaginibacter mallensis
NCBI taxonomy Id: 652787
Other names: LMG 25360, LMG:25360, M. mallensis, Mucilaginibacter mallensis Mannisto et al. 2010, Mucilaginibacter sp. MP1X4, strain MP1X4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.