BN9_013040 protein (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN9_013040

WD_REPEATS_REGION domain-containing protein. (506 aa)

Predicted Functional Partners:

BN9_061060

0.935

BN9_063910

0.929

BN9_029470

0.927

BN9_093560

0.906

BN9_031680

0.882

BN9_088960

0.869

BN9_113010

0.869

BN9_123570

0.852

BN9_043070

0.850

BN9_023620

0.849

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_013040	BN9_023620	A0A024G1I6	A0A024G4U6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.849
BN9_013040	BN9_029470	A0A024G1I6	A0A024G667	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.927
BN9_013040	BN9_031680	A0A024G1I6	A0A024G797	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.882
BN9_013040	BN9_043070	A0A024G1I6	A0A024G9U0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.850
BN9_013040	BN9_061060	A0A024G1I6	A0A024GFB3	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.935
BN9_013040	BN9_063910	A0A024G1I6	A0A024GF52	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.929
BN9_013040	BN9_088960	A0A024G1I6	A0A024GM73	WD_REPEATS_REGION domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.869
BN9_013040	BN9_093560	A0A024G1I6	A0A024GNB9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.906
BN9_013040	BN9_113010	A0A024G1I6	A0A024GTE5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.869
BN9_013040	BN9_123570	A0A024G1I6	A0A024GVS9	WD_REPEATS_REGION domain-containing protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.852
BN9_023620	BN9_013040	A0A024G4U6	A0A024G1I6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.849
BN9_023620	BN9_029470	A0A024G4U6	A0A024G667	Uncharacterized protein.	Uncharacterized protein.	0.993
BN9_023620	BN9_031680	A0A024G4U6	A0A024G797	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
BN9_023620	BN9_043070	A0A024G4U6	A0A024G9U0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
BN9_023620	BN9_061060	A0A024G4U6	A0A024GFB3	Uncharacterized protein.	Brix domain-containing protein.	0.992
BN9_023620	BN9_063910	A0A024G4U6	A0A024GF52	Uncharacterized protein.	Brix domain-containing protein.	0.991
BN9_023620	BN9_088960	A0A024G4U6	A0A024GM73	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.989
BN9_023620	BN9_093560	A0A024G4U6	A0A024GNB9	Uncharacterized protein.	Uncharacterized protein.	0.991
BN9_023620	BN9_113010	A0A024G4U6	A0A024GTE5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.885
BN9_023620	BN9_123570	A0A024G4U6	A0A024GVS9	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.984