BN9_015320 protein (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN9_015320

Uncharacterized protein. (708 aa)

Predicted Functional Partners:

BN9_119910

0.927

BN9_020040

0.900

BN9_100370

0.886

BN9_123870

0.860

BN9_031840

0.837

BN9_126840

0.833

BN9_099240

0.833

BN9_119740

0.833

BN9_003360

0.831

BN9_016580

0.831

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_003360	BN9_015320	A0A024FZ25	A0A024G1M2	PX domain-containing protein.	Uncharacterized protein.	0.831
BN9_003360	BN9_020040	A0A024FZ25	A0A024G378	PX domain-containing protein.	RPOLD domain-containing protein.	0.961
BN9_003360	BN9_031840	A0A024FZ25	A0A024G6E3	PX domain-containing protein.	Uncharacterized protein.	0.961
BN9_003360	BN9_099240	A0A024FZ25	A0A024GPR2	PX domain-containing protein.	ING domain-containing protein.	0.902
BN9_003360	BN9_100370	A0A024FZ25	A0A024GR59	PX domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.964
BN9_003360	BN9_119740	A0A024FZ25	A0A024GUM2	PX domain-containing protein.	ING domain-containing protein.	0.902
BN9_003360	BN9_119910	A0A024FZ25	A0A024GVC6	PX domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.947
BN9_003360	BN9_123870	A0A024FZ25	A0A024FVG0	PX domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.960
BN9_003360	BN9_126840	A0A024FZ25	A0A024FWG5	PX domain-containing protein.	Uncharacterized protein.	0.902
BN9_015320	BN9_003360	A0A024G1M2	A0A024FZ25	Uncharacterized protein.	PX domain-containing protein.	0.831
BN9_015320	BN9_016580	A0A024G1M2	A0A024G3K9	Uncharacterized protein.	Uncharacterized protein.	0.831
BN9_015320	BN9_020040	A0A024G1M2	A0A024G378	Uncharacterized protein.	RPOLD domain-containing protein.	0.900
BN9_015320	BN9_031840	A0A024G1M2	A0A024G6E3	Uncharacterized protein.	Uncharacterized protein.	0.837
BN9_015320	BN9_099240	A0A024G1M2	A0A024GPR2	Uncharacterized protein.	ING domain-containing protein.	0.833
BN9_015320	BN9_100370	A0A024G1M2	A0A024GR59	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.886
BN9_015320	BN9_119740	A0A024G1M2	A0A024GUM2	Uncharacterized protein.	ING domain-containing protein.	0.833
BN9_015320	BN9_119910	A0A024G1M2	A0A024GVC6	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.927
BN9_015320	BN9_123870	A0A024G1M2	A0A024FVG0	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.860
BN9_015320	BN9_126840	A0A024G1M2	A0A024FWG5	Uncharacterized protein.	Uncharacterized protein.	0.833
BN9_016580	BN9_015320	A0A024G3K9	A0A024G1M2	Uncharacterized protein.	Uncharacterized protein.	0.831