BN9_015470 protein (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN9_015470

Uncharacterized protein. (80 aa)

Predicted Functional Partners:

BN9_120480

0.974

BN9_032480

0.973

BN9_072450

0.973

BN9_096750

0.973

BN9_059720

0.965

BN9_031590

0.965

BN9_027520

0.962

BN9_098850

0.960

BN9_134110

0.960

BN9_003760

0.959

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_003760	BN9_015470	A0A024FZ57	A0A024G1P0	Uncharacterized protein.	Uncharacterized protein.	0.959
BN9_003760	BN9_027520	A0A024FZ57	A0A024G610	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.995
BN9_003760	BN9_031590	A0A024FZ57	A0A024G6B7	Uncharacterized protein.	30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.996
BN9_003760	BN9_032480	A0A024FZ57	A0A024G741	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.937
BN9_003760	BN9_059720	A0A024FZ57	A0A024FT07	Uncharacterized protein.	Uncharacterized protein.	0.953
BN9_003760	BN9_072450	A0A024FZ57	A0A024GHW9	Uncharacterized protein.	Uncharacterized protein.	0.937
BN9_003760	BN9_096750	A0A024FZ57	A0A024GNR9	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.994
BN9_003760	BN9_098850	A0A024FZ57	A0A024GP80	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.994
BN9_003760	BN9_120480	A0A024FZ57	A0A024GU97	Uncharacterized protein.	Uncharacterized protein.	0.995
BN9_003760	BN9_134110	A0A024FZ57	A0A024GVP7	Uncharacterized protein.	Uncharacterized protein.	0.965
BN9_015470	BN9_003760	A0A024G1P0	A0A024FZ57	Uncharacterized protein.	Uncharacterized protein.	0.959
BN9_015470	BN9_027520	A0A024G1P0	A0A024G610	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.962
BN9_015470	BN9_031590	A0A024G1P0	A0A024G6B7	Uncharacterized protein.	30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.965
BN9_015470	BN9_032480	A0A024G1P0	A0A024G741	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.973
BN9_015470	BN9_059720	A0A024G1P0	A0A024FT07	Uncharacterized protein.	Uncharacterized protein.	0.965
BN9_015470	BN9_072450	A0A024G1P0	A0A024GHW9	Uncharacterized protein.	Uncharacterized protein.	0.973
BN9_015470	BN9_096750	A0A024G1P0	A0A024GNR9	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.973
BN9_015470	BN9_098850	A0A024G1P0	A0A024GP80	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.960
BN9_015470	BN9_120480	A0A024G1P0	A0A024GU97	Uncharacterized protein.	Uncharacterized protein.	0.974
BN9_015470	BN9_134110	A0A024G1P0	A0A024GVP7	Uncharacterized protein.	Uncharacterized protein.	0.960