BN9_021800 protein (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN9_021800

Uncharacterized protein. (1339 aa)

Predicted Functional Partners:

BN9_092730

0.976

BN9_033610

0.939

BN9_063340

0.835

BN9_059990

0.807

BN9_059960

0.807

BN9_059970

0.807

BN9_059980

0.807

BN9_060000

0.807

BN9_020170

0.798

BN9_108060

0.753

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_020170	BN9_021800	A0A024G300	A0A024G433	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.798
BN9_020170	BN9_059960	A0A024G300	A0A024GEC9	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.764
BN9_020170	BN9_059970	A0A024G300	A0A024GEK3	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.764
BN9_020170	BN9_059980	A0A024G300	A0A024GF07	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.764
BN9_020170	BN9_059990	A0A024G300	A0A024GE20	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.764
BN9_020170	BN9_060000	A0A024G300	A0A024GFK9	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.764
BN9_020170	BN9_092730	A0A024G300	A0A024GMU6	Sec8_exocyst domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.544
BN9_020170	BN9_108060	A0A024G300	A0A024GRZ5	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.998
BN9_021800	BN9_020170	A0A024G433	A0A024G300	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.798
BN9_021800	BN9_033610	A0A024G433	A0A024G8C1	Uncharacterized protein.	Uncharacterized protein.	0.939
BN9_021800	BN9_059960	A0A024G433	A0A024GEC9	Uncharacterized protein.	Uncharacterized protein.	0.807
BN9_021800	BN9_059970	A0A024G433	A0A024GEK3	Uncharacterized protein.	Uncharacterized protein.	0.807
BN9_021800	BN9_059980	A0A024G433	A0A024GF07	Uncharacterized protein.	Uncharacterized protein.	0.807
BN9_021800	BN9_059990	A0A024G433	A0A024GE20	Uncharacterized protein.	Uncharacterized protein.	0.807
BN9_021800	BN9_060000	A0A024G433	A0A024GFK9	Uncharacterized protein.	Uncharacterized protein.	0.807
BN9_021800	BN9_063340	A0A024G433	A0A024GFI6	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.835
BN9_021800	BN9_092730	A0A024G433	A0A024GMU6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.976
BN9_021800	BN9_108060	A0A024G433	A0A024GRZ5	Uncharacterized protein.	Uncharacterized protein.	0.753
BN9_033610	BN9_021800	A0A024G8C1	A0A024G433	Uncharacterized protein.	Uncharacterized protein.	0.939
BN9_033610	BN9_059960	A0A024G8C1	A0A024GEC9	Uncharacterized protein.	Uncharacterized protein.	0.605

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

40

average node degree:

7.27

avg. local clustering coefficient:

0.923

expected number of edges:

14

PPI enrichment p-value:

6.66e-09

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016558

Protein import into peroxisome matrix

9 of 13

2.88

10.37

6.14e-21

GO:0016560

Protein import into peroxisome matrix, docking

5 of 6

2.96

5.77

1.86e-11

GO:0006886

Intracellular protein transport

10 of 275

1.6

3.49

1.39e-13

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005052

Peroxisome matrix targeting signal-1 binding

2 of 2

3.04

1.2

0.0069

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005778

Peroxisomal membrane

8 of 33

2.42

7.05

1.09e-15

GO:0005777

Peroxisome

9 of 87

2.05

5.81

1.22e-15

GO:1990429

Peroxisomal importomer complex

4 of 4

3.04

4.57

4.03e-09

GO:0016020

Membrane

9 of 2199

0.65

0.53

0.00075

GO:0005829

Cytosol

5 of 821

0.82

0.49

0.0288

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:9523

Protein import into peroxisome matrix, and Pex19 protein

9 of 15

2.82

10.18

8.65e-21

CL:9540

Peroxisomal importomer complex, and Pex19 protein

3 of 5

2.82

2.74

9.38e-06

CL:9525

Protein import into peroxisome matrix, and Bile acid metabolic process

3 of 6

2.74

2.67

1.21e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map04146

Peroxisome

9 of 92

2.03

5.73

1.11e-15

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-9033241

Peroxisomal protein import

9 of 139

1.85

4.44

2.49e-13

MAP-9609507

Protein localization

9 of 216

1.66

3.47

5.83e-12

MAP-9603798

Class I peroxisomal membrane protein import

4 of 22

2.3

2.94

1.73e-06

MAP-9664873

Pexophagy

2 of 9

2.39

1.09

0.0097

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005778

Peroxisomal membrane

7 of 27

2.45

6.16

2.28e-13

GOCC:0005777

Peroxisome

8 of 94

1.97

4.71

1.01e-12

GOCC:0016020

Membrane

8 of 1387

0.8

0.68

0.00051

GOCC:0005737

Cytoplasm

9 of 2852

0.54

0.39

0.0096

GOCC:0005622

Intracellular

11 of 5889

0.31

0.24

0.0404

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF04757

Pex2 / Pex12 amino terminal region

2 of 2

3.04

1.28

0.0050

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR025655

Peroxisomal membrane protein 14

2 of 2

3.04

1.03

0.0139

IPR024111

PEX5/PEX5L

2 of 2

3.04

1.03

0.0139

IPR006845

Pex, N-terminal

2 of 2

3.04

1.03

0.0139

IPR006785

Peroxisome membrane anchor protein Pex14p, N-terminal

2 of 2

3.04

1.03

0.0139

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (22%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About