BN9_040550 protein (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN9_040550

Uncharacterized protein. (209 aa)

Predicted Functional Partners:

BN9_051940

0.941

BN9_067930

0.941

BN9_084960

0.941

BN9_105590

0.941

BN9_006980

0.940

BN9_051370

0.940

BN9_107770

0.936

BN9_074990

0.934

BN9_005720

0.932

BN9_119910

0.932

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_005720	BN9_006980	A0A024FYY5	A0A024FZB8	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.919
BN9_005720	BN9_040550	A0A024FYY5	A0A024G8S3	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.932
BN9_005720	BN9_051370	A0A024FYY5	A0A024GDC3	TFIIE beta domain-containing protein.	Acyl_transf_3 domain-containing protein.	0.946
BN9_005720	BN9_051940	A0A024FYY5	A0A024GCC0	TFIIE beta domain-containing protein.	TFIID_20kDa domain-containing protein.	0.950
BN9_005720	BN9_067930	A0A024FYY5	A0A024GHR0	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.940
BN9_005720	BN9_074990	A0A024FYY5	A0A024FSZ8	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.985
BN9_005720	BN9_084960	A0A024FYY5	A0A024GLA1	TFIIE beta domain-containing protein.	TAFII55_N domain-containing protein.	0.942
BN9_005720	BN9_105590	A0A024FYY5	A0A024GR62	TFIIE beta domain-containing protein.	Bromo domain-containing protein.	0.938
BN9_005720	BN9_107770	A0A024FYY5	A0A024GRY7	TFIIE beta domain-containing protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.997
BN9_005720	BN9_119910	A0A024FYY5	A0A024GVC6	TFIIE beta domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.989
BN9_006980	BN9_005720	A0A024FZB8	A0A024FYY5	Uncharacterized protein.	TFIIE beta domain-containing protein.	0.919
BN9_006980	BN9_040550	A0A024FZB8	A0A024G8S3	Uncharacterized protein.	Uncharacterized protein.	0.940
BN9_006980	BN9_051370	A0A024FZB8	A0A024GDC3	Uncharacterized protein.	Acyl_transf_3 domain-containing protein.	0.997
BN9_006980	BN9_051940	A0A024FZB8	A0A024GCC0	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.997
BN9_006980	BN9_067930	A0A024FZB8	A0A024GHR0	Uncharacterized protein.	Uncharacterized protein.	0.996
BN9_006980	BN9_074990	A0A024FZB8	A0A024FSZ8	Uncharacterized protein.	Uncharacterized protein.	0.922
BN9_006980	BN9_084960	A0A024FZB8	A0A024GLA1	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.996
BN9_006980	BN9_105590	A0A024FZB8	A0A024GR62	Uncharacterized protein.	Bromo domain-containing protein.	0.996
BN9_006980	BN9_107770	A0A024FZB8	A0A024GRY7	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.920
BN9_006980	BN9_119910	A0A024FZB8	A0A024GVC6	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.918