BN9_050150 protein (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN9_050150

MYND-type domain-containing protein. (407 aa)

Predicted Functional Partners:

BN9_026150

0.829

BN9_026160

0.829

BN9_033680

0.774

BN9_022280

0.747

BN9_093190

0.746

BN9_097610

0.682

BN9_078900

0.682

BN9_033830

0.679

BN9_130760

0.625

BN9_109600

0.625

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_022280	BN9_033830	A0A024G572	A0A024G7F5	C2 domain-containing protein.	Uncharacterized protein.	0.853
BN9_022280	BN9_050150	A0A024G572	A0A024GBJ1	C2 domain-containing protein.	MYND-type domain-containing protein.	0.747
BN9_022280	BN9_078900	A0A024G572	A0A024GJ95	C2 domain-containing protein.	Uncharacterized protein.	0.884
BN9_022280	BN9_093190	A0A024G572	A0A024GMY4	C2 domain-containing protein.	Uncharacterized protein.	0.855
BN9_022280	BN9_097610	A0A024G572	A0A024FTZ7	C2 domain-containing protein.	Uncharacterized protein.	0.884
BN9_026150	BN9_033680	A0A024G4Z4	A0A024G7E0	Tr-type G domain-containing protein.	Kin17_mid domain-containing protein.	0.588
BN9_026150	BN9_050150	A0A024G4Z4	A0A024GBJ1	Tr-type G domain-containing protein.	MYND-type domain-containing protein.	0.829
BN9_026160	BN9_033680	A0A024G584	A0A024G7E0	Tr-type G domain-containing protein.	Kin17_mid domain-containing protein.	0.588
BN9_026160	BN9_050150	A0A024G584	A0A024GBJ1	Tr-type G domain-containing protein.	MYND-type domain-containing protein.	0.829
BN9_033680	BN9_026150	A0A024G7E0	A0A024G4Z4	Kin17_mid domain-containing protein.	Tr-type G domain-containing protein.	0.588
BN9_033680	BN9_026160	A0A024G7E0	A0A024G584	Kin17_mid domain-containing protein.	Tr-type G domain-containing protein.	0.588
BN9_033680	BN9_050150	A0A024G7E0	A0A024GBJ1	Kin17_mid domain-containing protein.	MYND-type domain-containing protein.	0.774
BN9_033680	BN9_109600	A0A024G7E0	A0A024GRR2	Kin17_mid domain-containing protein.	Tr-type G domain-containing protein.	0.707
BN9_033680	BN9_130760	A0A024G7E0	A0A024FXB6	Kin17_mid domain-containing protein.	Tr-type G domain-containing protein.	0.587
BN9_033830	BN9_022280	A0A024G7F5	A0A024G572	Uncharacterized protein.	C2 domain-containing protein.	0.853
BN9_033830	BN9_050150	A0A024G7F5	A0A024GBJ1	Uncharacterized protein.	MYND-type domain-containing protein.	0.679
BN9_033830	BN9_078900	A0A024G7F5	A0A024GJ95	Uncharacterized protein.	Uncharacterized protein.	0.906
BN9_033830	BN9_093190	A0A024G7F5	A0A024GMY4	Uncharacterized protein.	Uncharacterized protein.	0.927
BN9_033830	BN9_097610	A0A024G7F5	A0A024FTZ7	Uncharacterized protein.	Uncharacterized protein.	0.906
BN9_050150	BN9_022280	A0A024GBJ1	A0A024G572	MYND-type domain-containing protein.	C2 domain-containing protein.	0.747