BN9_052260 protein (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BN9_052260

Uncharacterized protein. (887 aa)

Predicted Functional Partners:

BN9_056030

0.973

BN9_008930

0.946

BN9_009830

0.929

BN9_063810

0.929

BN9_065620

0.929

BN9_081670

0.929

BN9_087850

0.929

BN9_020740

0.926

BN9_016470

0.899

BN9_030330

0.899

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_008930	BN9_009830	A0A024FZS9	A0A024G0L3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.934
BN9_008930	BN9_020740	A0A024FZS9	A0A024G3F3	Uncharacterized protein.	Uncharacterized protein.	0.940
BN9_008930	BN9_052260	A0A024FZS9	A0A024GD40	Uncharacterized protein.	Uncharacterized protein.	0.946
BN9_008930	BN9_063810	A0A024FZS9	A0A024GF44	Uncharacterized protein.	Uncharacterized protein.	0.934
BN9_008930	BN9_065620	A0A024FZS9	A0A024GGJ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.934
BN9_008930	BN9_081670	A0A024FZS9	A0A024GKC8	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.934
BN9_008930	BN9_087850	A0A024FZS9	A0A024GLL2	Uncharacterized protein.	Uncharacterized protein.	0.934
BN9_009830	BN9_008930	A0A024G0L3	A0A024FZS9	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.934
BN9_009830	BN9_020740	A0A024G0L3	A0A024G3F3	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.915
BN9_009830	BN9_052260	A0A024G0L3	A0A024GD40	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.929
BN9_009830	BN9_056030	A0A024G0L3	A0A024GE18	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.723
BN9_016470	BN9_052260	A0A024G203	A0A024GD40	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.899
BN9_020740	BN9_008930	A0A024G3F3	A0A024FZS9	Uncharacterized protein.	Uncharacterized protein.	0.940
BN9_020740	BN9_009830	A0A024G3F3	A0A024G0L3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.915
BN9_020740	BN9_052260	A0A024G3F3	A0A024GD40	Uncharacterized protein.	Uncharacterized protein.	0.926
BN9_020740	BN9_056030	A0A024G3F3	A0A024GE18	Uncharacterized protein.	Uncharacterized protein.	0.798
BN9_020740	BN9_063810	A0A024G3F3	A0A024GF44	Uncharacterized protein.	Uncharacterized protein.	0.915
BN9_020740	BN9_065620	A0A024G3F3	A0A024GGJ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.915
BN9_020740	BN9_081670	A0A024G3F3	A0A024GKC8	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.915
BN9_020740	BN9_087850	A0A024G3F3	A0A024GLL2	Uncharacterized protein.	Uncharacterized protein.	0.915