BN9_063030 protein (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN9_063030

Uncharacterized protein. (863 aa)

Predicted Functional Partners:

BN9_036240

0.663

BN9_093430

0.576

BN9_023520

0.558

BN9_083980

0.558

BN9_064610

0.535

BN9_108660

0.535

BN9_098290

0.517

BN9_062490

0.504

BN9_033130

0.504

BN9_040220

0.504

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_023520	BN9_063030	A0A024G4T8	A0A024GF99	U-box domain-containing protein.	Uncharacterized protein.	0.558
BN9_033130	BN9_063030	A0A024G790	A0A024GF99	CCT domain-containing protein.	Uncharacterized protein.	0.504
BN9_033130	BN9_064610	A0A024G790	A0A024GFB2	CCT domain-containing protein.	BZIP domain-containing protein.	0.600
BN9_033130	BN9_093430	A0A024G790	A0A024GNZ9	CCT domain-containing protein.	Uncharacterized protein.	0.569
BN9_033130	BN9_108660	A0A024G790	A0A024GSJ9	CCT domain-containing protein.	BZIP domain-containing protein.	0.600
BN9_036240	BN9_063030	A0A024G8G9	A0A024GF99	Uncharacterized protein.	Uncharacterized protein.	0.663
BN9_036240	BN9_064610	A0A024G8G9	A0A024GFB2	Uncharacterized protein.	BZIP domain-containing protein.	0.714
BN9_036240	BN9_093430	A0A024G8G9	A0A024GNZ9	Uncharacterized protein.	Uncharacterized protein.	0.925
BN9_036240	BN9_108660	A0A024G8G9	A0A024GSJ9	Uncharacterized protein.	BZIP domain-containing protein.	0.714
BN9_040220	BN9_063030	A0A024G908	A0A024GF99	CCT domain-containing protein.	Uncharacterized protein.	0.504
BN9_040220	BN9_064610	A0A024G908	A0A024GFB2	CCT domain-containing protein.	BZIP domain-containing protein.	0.600
BN9_040220	BN9_093430	A0A024G908	A0A024GNZ9	CCT domain-containing protein.	Uncharacterized protein.	0.569
BN9_040220	BN9_108660	A0A024G908	A0A024GSJ9	CCT domain-containing protein.	BZIP domain-containing protein.	0.600
BN9_062490	BN9_063030	A0A024FSV9	A0A024GF99	CCT domain-containing protein.	Uncharacterized protein.	0.504
BN9_062490	BN9_064610	A0A024FSV9	A0A024GFB2	CCT domain-containing protein.	BZIP domain-containing protein.	0.600
BN9_062490	BN9_093430	A0A024FSV9	A0A024GNZ9	CCT domain-containing protein.	Uncharacterized protein.	0.569
BN9_062490	BN9_108660	A0A024FSV9	A0A024GSJ9	CCT domain-containing protein.	BZIP domain-containing protein.	0.600
BN9_063030	BN9_023520	A0A024GF99	A0A024G4T8	Uncharacterized protein.	U-box domain-containing protein.	0.558
BN9_063030	BN9_033130	A0A024GF99	A0A024G790	Uncharacterized protein.	CCT domain-containing protein.	0.504
BN9_063030	BN9_036240	A0A024GF99	A0A024G8G9	Uncharacterized protein.	Uncharacterized protein.	0.663