STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU64777.1PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase TnpA. (429 aa)    
Predicted Functional Partners:
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
     0.917
ADU64775.1
PFAM: cation efflux protein; KEGG: maq:Maqu_4003 CDF family heavy metal/H(+) antiporter.
 
     0.897
ADU64774.1
TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: abo:ABO_1367 MerR family transcriptional regulator; SMART: regulatory protein MerR.
 
     0.667
ADU64766.1
PFAM: cation efflux protein; KEGG: maq:Maqu_4003 CDF family heavy metal/H(+) antiporter.
 
     0.664
ADU64778.1
PFAM: pyruvate carboxyltransferase; KEGG: lic:LIC10409 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.407
Your Current Organism:
Desulfurispirillum indicum
NCBI taxonomy Id: 653733
Other names: D. indicum S5, Desulfurispirillum indicum S5, Desulfurispirillum indicum str. S5, Desulfurispirillum indicum strain S5, bacterium S5, dissimilatory selenate-respiring bacterium S5
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