STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU65164.1PFAM: histidine triad (HIT) protein; KEGG: gme:Gmet_1225 histidine triad (HIT) protein. (115 aa)    
Predicted Functional Partners:
ADU65165.1
KEGG: cim:CIMG_07439 hypothetical protein.
       0.773
ADU65166.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: dat:HRM2_32950 putative permease of the drug/metabolite transporter (DMT) superfamily.
       0.773
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.699
ADU65661.1
TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: gme:Gmet_1222 hemolysin A; SMART: RNA-binding S4 domain protein.
      0.696
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.693
ADU67129.1
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.664
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.658
ADU65408.1
KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like; PFAM: type III restriction protein res subunit; DNA primase small subunit; helicase domain protein; SMART: DEAD-like helicase.
    
  0.650
ADU66429.1
KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like; PFAM: type III restriction protein res subunit; DNA primase small subunit; SMART: DEAD-like helicase.
    
  0.650
ADU65163.1
KEGG: tma:TM0690 hypothetical protein.
       0.645
Your Current Organism:
Desulfurispirillum indicum
NCBI taxonomy Id: 653733
Other names: D. indicum S5, Desulfurispirillum indicum S5, Desulfurispirillum indicum str. S5, Desulfurispirillum indicum strain S5, bacterium S5, dissimilatory selenate-respiring bacterium S5
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