STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU65300.1PFAM: OstA family protein; KEGG: glo:Glov_1235 organic solvent tolerance protein. (750 aa)    
Predicted Functional Partners:
ADU65338.1
PFAM: OstA family protein; KEGG: dak:DaAHT2_2208 lipopolysaccharide transport periplasmic protein LptA.
  
 
 0.896
ADU65301.1
KEGG: ote:Oter_2353 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein.
       0.800
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.773
ADU66363.1
KEGG: geo:Geob_3486 hypothetical protein.
 
  
 0.717
ADU66304.1
KEGG: pca:Pcar_2975 TolB protein.
 
  
 0.655
ADU66548.1
TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dap:Dacet_2380 outer membrane assembly lipoprotein YfiO.
 
  
 0.639
ADU66348.1
KEGG: ddf:DEFDS_0104 hypothetical protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein.
  
  
 0.610
ADU66685.1
ATP-binding region ATPase domain protein; KEGG: geo:Geob_2314 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein.
  
     0.595
ADU66349.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: ddf:DEFDS_0105 outer membrane protein OmpH.
  
   
 0.568
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
  
 0.558
Your Current Organism:
Desulfurispirillum indicum
NCBI taxonomy Id: 653733
Other names: D. indicum S5, Desulfurispirillum indicum S5, Desulfurispirillum indicum str. S5, Desulfurispirillum indicum strain S5, bacterium S5, dissimilatory selenate-respiring bacterium S5
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