STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU65415.1KEGG: pmy:Pmen_4544 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease. (250 aa)    
Predicted Functional Partners:
ADU64761.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 0.983
ADU67287.1
DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: pca:Pcar_1222 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type.
   
 0.982
ADU65805.1
KEGG: wsu:WS0596 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
  
  
  0.969
ADU65309.1
Hypothetical protein; KEGG: aar:Acear_0044 DNA polymerase III, delta prime subunit.
   
 0.955
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.955
ADU65416.1
KEGG: pat:Patl_2504 cyclic nucleotide-binding protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: cyclic nucleotide-binding; CBS domain containing protein.
 
    0.950
ADU65672.1
PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: glo:Glov_2482 DNA-directed DNA polymerase; SMART: Exonuclease.
  
  
  0.950
ADU66891.1
KEGG: oih:OB1057 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
  
  
  0.917
ADU66588.1
PFAM: protein of unknown function DUF294 nucleotidyltransferase; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; KEGG: afw:Anae109_4030 CBS domain-containing protein.
 
    0.756
ADU65417.1
KEGG: pat:Patl_2505 choline/carnitine/betaine transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.753
Your Current Organism:
Desulfurispirillum indicum
NCBI taxonomy Id: 653733
Other names: D. indicum S5, Desulfurispirillum indicum S5, Desulfurispirillum indicum str. S5, Desulfurispirillum indicum strain S5, bacterium S5, dissimilatory selenate-respiring bacterium S5
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