STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU66210.1KEGG: sat:SYN_01868 putative cytoplasmic protein. (220 aa)    
Predicted Functional Partners:
ADU66211.1
PFAM: TraU family protein; KEGG: sat:SYN_01869 conjugal DNA transfer protein.
 
     0.946
ADU66212.1
KEGG: gsu:GSU2124 thioredoxin domain-containing protein.
 
     0.944
ADU66213.1
PFAM: TraH family protein; KEGG: sat:SYN_01874 pilus assembly protein.
 
     0.944
ADU66207.1
KEGG: sat:SYN_01872 type IV secretory protease.
 
     0.878
ADU66193.1
Hypothetical protein; KEGG: sat:SYN_01863 pilus assembly protein.
 
     0.820
ADU66197.1
KEGG: sat:SYN_01865 sex pilus assembly protein.
 
     0.820
ADU66199.1
KEGG: sat:SYN_01867 hypothetical protein.
 
     0.820
ADU66167.1
KEGG: sat:SYN_01886 DNA transfer in the process of conjugation and F pilus assembly protein.
  
     0.774
ADU66214.1
Hypothetical protein; KEGG: sat:SYN_01875 DNA transfer and F pilus assembly protein.
       0.762
ADU66188.1
PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: gsu:GSU0850 hypothetical protein.
 
     0.689
Your Current Organism:
Desulfurispirillum indicum
NCBI taxonomy Id: 653733
Other names: D. indicum S5, Desulfurispirillum indicum S5, Desulfurispirillum indicum str. S5, Desulfurispirillum indicum strain S5, bacterium S5, dissimilatory selenate-respiring bacterium S5
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