STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU66376.1PFAM: ferric-uptake regulator; KEGG: bbe:BBR47_01310 zinc-specific metalloregulatory protein; Belongs to the Fur family. (145 aa)    
Predicted Functional Partners:
ADU66377.1
PFAM: ABC-3 protein; KEGG: gtn:GTNG_2407 high-affinity zinc uptake system membrane protein ZnuB.
 
  
 0.887
ADU66378.1
KEGG: hmo:HM1_2421 abc transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.858
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.811
ADU65599.1
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; KEGG: ddf:DEFDS_0018 peroxiredoxin.
  
  
 0.665
ADU67074.1
KEGG: cbe:Cbei_1260 hypothetical protein.
  
    0.646
ADU66993.1
PFAM: CoA-binding domain protein; KEGG: hau:Haur_4825 CoA-binding domain-containing protein.
  
    0.575
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.547
ADU66465.1
RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.547
ADU65168.1
Iron dependent repressor; KEGG: ddf:DEFDS_1285 MntR family transcriptional regulator; PFAM: iron dependent repressor; SMART: iron dependent repressor.
  
  
 0.541
ADU66123.1
KEGG: pca:Pcar_1482 glutamate synthase, large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.531
Your Current Organism:
Desulfurispirillum indicum
NCBI taxonomy Id: 653733
Other names: D. indicum S5, Desulfurispirillum indicum S5, Desulfurispirillum indicum str. S5, Desulfurispirillum indicum strain S5, bacterium S5, dissimilatory selenate-respiring bacterium S5
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