STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU66434.1KEGG: dol:Dole_2727 ABC transporter. (609 aa)    
Predicted Functional Partners:
ADU66435.1
PFAM: restriction modification system DNA specificity domain; KEGG: neu:NE2496 restriction modification system, type I.
 
     0.913
ADU66436.1
PFAM: N-6 DNA methylase; KEGG: dol:Dole_2725 N-6 DNA methylase.
 
     0.912
ADU66439.1
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; KEGG: dol:Dole_2724 type III restriction protein res subunit; SMART: DEAD-like helicase.
 
     0.867
ADU66433.1
KEGG: dol:Dole_2728 hypothetical protein.
       0.788
ADU66437.1
PFAM: KilA, N-terminal/APSES-type HTH, DNA-binding; KEGG: gur:Gura_3302 hypothetical protein.
       0.603
ADU66432.1
PFAM: filamentation induced by cAMP protein Fic; KEGG: sfu:Sfum_3863 filamentation induced by cAMP protein Fic.
       0.562
ADU67062.1
KEGG: lel:LELG_00765 hypothetical protein.
   
    0.509
ADU66440.1
Helix-turn-helix domain protein; KEGG: dde:Dde_2500 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.484
Your Current Organism:
Desulfurispirillum indicum
NCBI taxonomy Id: 653733
Other names: D. indicum S5, Desulfurispirillum indicum S5, Desulfurispirillum indicum str. S5, Desulfurispirillum indicum strain S5, bacterium S5, dissimilatory selenate-respiring bacterium S5
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