Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADU65456.1 | ADU66880.1 | Selin_0712 | Selin_2160 | Nitrogen-fixing NifU domain protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | PFAM: 4-oxalocrotonate tautomerase; KEGG: cgt:cgR_0081 hypothetical protein. | 0.432 |
ADU66880.1 | ADU65456.1 | Selin_2160 | Selin_0712 | PFAM: 4-oxalocrotonate tautomerase; KEGG: cgt:cgR_0081 hypothetical protein. | Nitrogen-fixing NifU domain protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.432 |
ADU66880.1 | ADU66881.1 | Selin_2160 | Selin_2161 | PFAM: 4-oxalocrotonate tautomerase; KEGG: cgt:cgR_0081 hypothetical protein. | ATPase; KEGG: ccv:CCV52592_0945 ATPase. | 0.481 |
ADU66880.1 | rhlE | Selin_2160 | Selin_2159 | PFAM: 4-oxalocrotonate tautomerase; KEGG: cgt:cgR_0081 hypothetical protein. | DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | 0.446 |
ADU66881.1 | ADU66880.1 | Selin_2161 | Selin_2160 | ATPase; KEGG: ccv:CCV52592_0945 ATPase. | PFAM: 4-oxalocrotonate tautomerase; KEGG: cgt:cgR_0081 hypothetical protein. | 0.481 |
rhlE | ADU66880.1 | Selin_2159 | Selin_2160 | DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | PFAM: 4-oxalocrotonate tautomerase; KEGG: cgt:cgR_0081 hypothetical protein. | 0.446 |