STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK68484.1TIGRFAM: ABC exporter membrane fusion protein, DevB family; KEGG: syn:sll1481 putative HlyD family secretion protein, DevB homolog. (439 aa)    
Predicted Functional Partners:
ACK68483.1
TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: npu:Npun_R5575 DevC protein.
 
    0.955
ACK68482.1
KEGG: ana:alr3649 heterocyst specific ABC-transporter, ATP-binding subunit DevA homolog; TIGRFAM: ABC exporter ATP-binding subunit, DevA family; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.831
ACK70519.1
TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: ana:alr3648 heterocyst specific ABC-transporter, membrane spanning subunit DevC homolog.
 
    0.752
ACK71142.1
TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: npu:Npun_F3176 DevC protein.
 
    0.747
ACK68481.1
PFAM: protein of unknown function DUF820; KEGG: mar:MAE_52190 hypothetical protein.
 
     0.725
ACK71888.1
PFAM: outer membrane efflux protein; KEGG: mar:MAE_14730 outer membrane efflux protein.
  
 
 0.659
ACK71968.1
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; KEGG: mar:MAE_54550 ABC-transporter ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase.
  
 
 0.498
ACK69380.1
PFAM: protein of unknown function DUF214; KEGG: mar:MAE_31160 probable ABC-transporter permease protein.
 
    0.486
ACK72864.1
PFAM: protein of unknown function DUF214; KEGG: mar:MAE_16600 possible ABC-transporter.
 
    0.482
ACK68876.1
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: npu:Npun_F3378 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter.
  
 
 0.444
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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