STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK69123.1Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mar:MAE_09380 transcriptional regulator. (331 aa)    
Predicted Functional Partners:
ACK73494.1
KEGG: mar:MAE_59450 hypothetical protein.
  
   
 0.649
ACK73041.1
KEGG: mar:MAE_17760 hypothetical protein.
  
   
 0.604
ACK69122.1
PFAM: MscS Mechanosensitive ion channel; KEGG: npu:Npun_F3073 MscS mechanosensitive ion channel.
  
    0.530
ACK71814.1
KEGG: syn:ssl0461 hypothetical protein.
  
     0.509
ACK73001.1
KEGG: mar:MAE_26810 hypothetical protein.
  
     0.488
ACK69444.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mar:MAE_40200 hypothetical protein.
  
  
 0.486
ACK69910.1
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: mar:MAE_29110 ferredoxin-dependent glutamate synthase.
  
  
 0.470
ACK72037.1
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: amr:AM1_6366 ferredoxin dependent glutamate synthase 1, putative.
  
  
 0.470
rpsU
PFAM: ribosomal protein S21; KEGG: mar:MAE_27270 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.449
ACK73299.1
KEGG: mar:MAE_02000 hypothetical protein.
  
     0.436
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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