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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK69355.1KEGG: mar:MAE_62600 hypothetical protein. (102 aa)    
Predicted Functional Partners:
ACK69356.1
Putative transcription regulator with HTH domain; KEGG: mar:MAE_44960 hypothetical protein.
 
 
 0.973
ACK71005.1
Putative transcription regulator with HTH domain; KEGG: mar:MAE_62590 hypothetical protein.
 
 
 0.910
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.519
ACK68880.1
PFAM: PilT protein domain protein; KEGG: mar:MAE_40120 PilT-like protein.
  
     0.459
ACK69451.1
PFAM: protein of unknown function DUF86; KEGG: lch:Lcho_0358 protein of unknown function DUF86.
  
  
  0.444
ACK72284.1
PFAM: protein of unknown function DUF86; KEGG: syf:Synpcc7942_0032 hypothetical protein.
  
  
  0.435
ACK68763.1
PFAM: protein of unknown function DUF86; KEGG: mar:MAE_47410 hypothetical protein.
  
  
  0.434
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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