STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK70151.1KEGG: syp:SYNPCC7002_D0021 CRISPR-associated Cas5e family protein. (271 aa)    
Predicted Functional Partners:
ACK70150.1
TIGRFAM: CRISPR-associated protein Csc1; KEGG: syp:SYNPCC7002_D0022 hypothetical protein.
 
     0.949
ACK70152.1
CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
 
   
 0.940
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.892
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.856
ACK70147.1
CRISPR-associated helicase, Cyano-type; KEGG: syp:SYNPCC7002_D0025 hypothetical protein; TIGRFAM: CRISPR-associated helicase, Cyano-type; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases.
 
   
 0.795
ACK70148.1
TIGRFAM: CRISPR-associated protein Csc3; KEGG: syp:SYNPCC7002_D0024 hypothetical protein.
 
     0.785
ACK70149.1
TIGRFAM: CRISPR-associated protein Csc2; KEGG: syp:SYNPCC7002_D0023 hypothetical protein.
 
     0.782
ACK70045.1
ATPase; KEGG: ava:Ava_C0224 ATPase.
  
     0.505
ACK73568.1
Signal transduction histidine kinase, LytS; KEGG: npu:Npun_R1884 hypothetical protein.
  
     0.491
ACK71493.1
KEGG: npu:Npun_R4206 hypothetical protein.
  
     0.476
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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