STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK70394.1Transposase, IS605 family; KEGG: chy:CHY_0599 ISChy9, transposase orfB. (514 aa)    
Predicted Functional Partners:
ACK71447.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.774
ACK71069.1
TIGRFAM: transposase, IS605 OrfB family; KEGG: dau:Daud_1910 hypothetical protein.
  
     0.674
ACK68675.1
KEGG: npu:Npun_R3406 hypothetical protein.
  
     0.666
ACK70225.1
TIGRFAM: transposase, IS605 OrfB family; KEGG: dau:Daud_1910 hypothetical protein.
  
     0.666
ACK73425.1
TIGRFAM: transposase, IS605 OrfB family; KEGG: dau:Daud_1910 hypothetical protein.
  
     0.655
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.647
ACK70174.1
KEGG: nha:Nham_0828 hypothetical protein.
  
     0.618
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
       0.512
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
   
  0.493
ACK71726.1
KEGG: npu:Npun_F4230 hypothetical protein.
  
     0.490
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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