STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK70441.1PFAM: MotA/TolQ/ExbB proton channel; KEGG: mar:MAE_08540 MotA/TolQ/ExbB proton channel family protein. (227 aa)    
Predicted Functional Partners:
ACK70442.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: syn:slr0678 putative biopolymer transport ExbD protein.
 
 
 0.986
ACK70813.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: syp:SYNPCC7002_G0136 ExbD-like protein.
 
 
 0.941
ACK68807.1
TIGRFAM: TonB family protein; KEGG: mar:MAE_59390 hypothetical protein.
  
 
 0.690
ACK70811.1
TIGRFAM: TonB family protein; KEGG: syn:slr1484 hypothetical protein.
  
 
 0.690
ACK71888.1
PFAM: outer membrane efflux protein; KEGG: mar:MAE_14730 outer membrane efflux protein.
  
   
 0.663
ACK71639.1
KEGG: ava:Ava_4816 hypothetical protein.
  
 
 0.619
ACK72973.1
KEGG: ava:Ava_4816 hypothetical protein.
  
 
 0.619
lpxA
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
   
 0.578
ACK72132.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mar:MAE_51260 ABC-transporter ATP-binding protein.
 
   
 0.555
lpxC
UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
  
     0.531
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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