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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK70574.1PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amr:AM1_1601 ABC transporter ATP-binding protein. (252 aa)    
Predicted Functional Partners:
ACK69380.1
PFAM: protein of unknown function DUF214; KEGG: mar:MAE_31160 probable ABC-transporter permease protein.
 
 0.939
ACK70573.1
PFAM: protein of unknown function DUF214; KEGG: amr:AM1_1602 ABC transporter, permease protein.
 
 
 0.919
ACK72864.1
PFAM: protein of unknown function DUF214; KEGG: mar:MAE_16600 possible ABC-transporter.
 
 0.918
ACK69731.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: npu:Npun_R5107 ABC transporter related.
    
0.897
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
   
 0.634
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.610
ACK71142.1
TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: npu:Npun_F3176 DevC protein.
 
 
 0.608
ACK68483.1
TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: npu:Npun_R5575 DevC protein.
 
 
 0.602
ACK70519.1
TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: ana:alr3648 heterocyst specific ABC-transporter, membrane spanning subunit DevC homolog.
 
 
 0.600
ACK69231.1
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: syn:sll0141 putative HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.552
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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