STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK70708.1PFAM: UbiA prenyltransferase; KEGG: ana:all0419 hypothetical protein. (309 aa)    
Predicted Functional Partners:
ACK70707.1
PFAM: TatD-related deoxyribonuclease; KEGG: ana:all0420 hypothetical protein.
 
   
 0.951
ACK68480.1
TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: ana:alr1108 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
    
 0.915
ACK68842.1
PFAM: protein of unknown function DUF564; KEGG: mar:MAE_08810 hypothetical protein.
    
 0.915
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
    
 0.915
plqA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family.
     
  0.900
ACK70706.1
KEGG: npu:Npun_F5232 hypothetical protein.
 
   
 0.899
ACK70709.1
PFAM: 3-dehydroquinate synthase; KEGG: npu:Npun_R5231 3-dehydroquinate synthase.
 
   
 0.864
ACK70710.1
KEGG: npu:Npun_F5235 hypothetical protein.
 
   
 0.859
ACK70711.1
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ana:all0415 hypothetical protein.
 
   
 0.830
ACK72645.1
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; KEGG: mar:MAE_50020 geranylgeranyl hydrogenase.
  
 
 0.830
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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