STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK71084.1PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: mar:MAE_31300 NAD-dependent epimerase/dehydratase. (315 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.782
ACK69765.1
KEGG: mar:MAE_25780 hypothetical protein.
 
     0.728
ACK70624.1
TIGRFAM: allophycocyanin, beta subunit; PFAM: Phycobilisome protein; KEGG: syn:slr1459 allophycocyanin beta-18 subunit.
  
     0.724
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: syf:Synpcc7942_0997 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
   0.722
cpcT
Protein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.710
ACK68631.1
TIGRFAM: phycocyanin, beta subunit; PFAM: Phycobilisome protein; KEGG: mar:MAE_24450 phycocyanin beta subunit.
  
     0.702
ndhO
Component of NDH complex; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.699
ACK69886.1
KEGG: mar:MAE_35130 transcriptional regulator.
  
     0.698
ACK70399.1
PFAM: Phycobilisome protein; KEGG: mar:MAE_46230 allophycocyanin-B.
  
     0.694
ACK69729.1
KEGG: syp:SYNPCC7002_A0555 hypothetical protein.
  
     0.693
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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