STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK72460.1KEGG: mar:MAE_04940 hypothetical protein. (408 aa)    
Predicted Functional Partners:
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
    0.687
ACK72461.1
TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: mar:MAE_04930 SixA type phosphohistidine phosphatase.
       0.629
ACK72189.1
KEGG: mar:MAE_15310 hypothetical protein.
  
     0.540
ACK71462.1
KEGG: npu:Npun_F5894 hypothetical protein.
  
     0.518
ACK70508.1
KEGG: mar:MAE_45790 hypothetical protein.
  
     0.482
ACK69734.1
PFAM: peptidase M48 Ste24p; KEGG: mar:MAE_33870 putative peptidase.
  
     0.448
ACK71479.1
KEGG: ter:Tery_4264 toll-interleukin receptor.
  
 
   0.441
ACK71594.1
KEGG: ava:Ava_2429 hypothetical protein.
  
     0.437
ACK72771.1
KEGG: npu:Npun_R6531 hypothetical protein.
  
     0.437
ACK69953.1
TIR protein; KEGG: npu:Npun_R0838 TIR protein.
  
 
   0.436
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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