STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK73122.1PFAM: Protein-arginine deiminase domain protein; Protein-arginine deiminase (PAD) central region; KEGG: cfa:487414 peptidyl arginine deiminase, type II. (664 aa)    
Predicted Functional Partners:
ACK72150.1
Aspartoacylase; KEGG: ava:Ava_1785 aspartoacylase.
  
     0.725
ACK71018.1
PFAM: Haem oxygenase-like; KEGG: syp:SYNPCC7002_A1991 heme oxygenase 2.
  
     0.656
ACK72020.1
PFAM: Haem oxygenase-like; KEGG: mar:MAE_14930 heme oxygenase.
  
     0.645
ACK69192.1
PFAM: Na-Ca exchanger/integrin-beta4; KEGG: nve:NEMVE_v1g218117 predicted protein Pfam: Calx-beta HN UPF0164 DUF877 DPPIV_N EGF EGF_2 CBM_2 PROSITE: EGF_2.
  
     0.618
ACK72725.1
PFAM: TROVE domain protein; KEGG: npu:Npun_F0915 TROVE domain-containing protein.
  
     0.585
ACK72637.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: amr:AM1_1657 hypothetical protein.
  
   
 0.517
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.480
ACK68603.1
PFAM: Collagen triple helix repeat; KEGG: cel:M199.5 M199.5.
  
     0.446
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.434
ACK73121.1
PFAM: protein of unknown function DUF820; KEGG: ava:Ava_1502 hypothetical protein.
       0.432
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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