STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK73409.1KEGG: ava:Ava_3810 hypothetical protein. (86 aa)    
Predicted Functional Partners:
ACK73410.1
PFAM: protein of unknown function DUF820; KEGG: syn:sll1222 hypothetical protein.
 
     0.819
ACK73407.1
KEGG: npu:Npun_R5979 hypothetical protein.
       0.773
ACK73408.1
KEGG: mar:MAE_01760 hypothetical protein.
       0.773
ACK71466.1
KEGG: mar:MAE_57910 hypothetical protein.
  
     0.668
ACK73195.1
KEGG: mar:MAE_57830 hypothetical protein.
  
     0.523
ACK69071.1
PFAM: alpha/beta hydrolase fold; KEGG: ana:all2058 unknown protein.
  
     0.490
ACK69732.1
KEGG: syn:ssl1911 glutamine synthetase inactivating factor IF7.
  
     0.461
ACK73405.1
Hypothetical protein.
       0.440
ileS
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.
       0.440
ACK70850.1
PFAM: protein of unknown function DUF820; KEGG: npu:Npun_F4622 hypothetical protein.
  
     0.436
Your Current Organism:
Gloeothece citriformis
NCBI taxonomy Id: 65393
Other names: Cyanothece sp. PCC 7424, G. citriformis PCC 7424, Gloeothece citriformis PCC 7424, Synechococcus sp. ATCC 29155 (no longer available), Synechococcus sp. PCC 7424
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.