STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES26007.1Serine protease Do; Belongs to the peptidase S1C family. (474 aa)    
Predicted Functional Partners:
SES26062.1
Anti sigma-E protein, RseA.
  
 
 0.985
SER31820.1
Outer membrane autotransporter barrel domain-containing protein.
   
 
 0.939
SES26027.1
Positive regulator of sigma(E), RseC/MucC; Manually curated.
  
  
 0.873
SES26046.1
Sigma E regulatory protein, MucB/RseB.
  
  
 0.848
SER44161.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.847
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.829
SES30458.1
OmpA-OmpF porin, OOP family.
    
 
 0.797
rpoE
RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.719
SES08849.1
Outer membrane protein (porin).
    
 
 0.669
SES03536.1
Putative hydrolase of the HAD superfamily.
 
 
  0.626
Your Current Organism:
Pseudomonas bauzanensis
NCBI taxonomy Id: 653930
Other names: CGMCC 1.9095, DSM 22558, LMG 26048, LMG:26048, P. bauzanensis, Pseudomonas bauzanensis Zhang et al. 2011, Pseudomonas sp. BZ93, strain BZ93
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