STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES31764.1Heme-degrading monooxygenase HmoA. (75 aa)    
Predicted Functional Partners:
SES31750.1
glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.773
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
  
  
 0.576
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
  0.521
SES31735.1
Transcriptional regulator, ArsR family.
       0.509
SES31721.1
Rhodanese-related sulfurtransferase.
       0.506
SES31707.1
Hypothetical protein.
       0.491
SER53615.1
Putative cyclase.
    
  0.474
SES31693.1
Glyoxylase, beta-lactamase superfamily II.
       0.420
Your Current Organism:
Pseudomonas bauzanensis
NCBI taxonomy Id: 653930
Other names: CGMCC 1.9095, DSM 22558, LMG 26048, LMG:26048, P. bauzanensis, Pseudomonas bauzanensis Zhang et al. 2011, Pseudomonas sp. BZ93, strain BZ93
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