Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMQ43967.1General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)    
Predicted Functional Partners:
AMQ43969.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
AMQ45106.1
Type II secretion protein K; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.965
exeI
General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.960
gspG
General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.951
AMQ43962.1
General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.923
AMQ43970.1
General secretion pathway protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.914
AMQ43971.1
Type II secretion protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.900
AMQ43963.1
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.883
exeF
General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.863
AMQ43972.1
Type II secretion protein N; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.846
Your Current Organism:
Aeromonas veronii
NCBI taxonomy Id: 654
Other names: A. veronii, ATCC 35624, ATCC 49904 [[Aeromonas ichthiosmia]], Aeromonas culicicola, Aeromonas culicicola Pidiyar et al. 2002, Aeromonas hybridization group 10 (HG10), Aeromonas ichthiosmia, Aeromonas sp. G18, Aeromonas sp. R1, Aeromonas sp. R9, Aeromonas sp. TH074, Aeromonas sp. TH076, CCUG 27821, CECT 4257, CECT 4486 [[Aeromonas ichthiosmia]], CIP 103438, CIP 104613 [[Aeromonas ichthiosmia]], CIP 107763 [[Aeromonas culicicola]], DSM 6393 [[Aeromonas ichthiosmia]], DSM 7386, Enteric Group 77, JCM 7375, JCM 8354 [[Aeromonas ichthiosmia]], LMG 12645 [[Aeromonas ichthiosmia]], LMG:12645 [[Aeromonas ichthiosmia]], MTCC 3249 [[Aeromonas culicicola]], NCIMB 13205 [[Aeromonas ichthiosmia]], NICM 5147 [[Aeromonas culicicola]], strain 115/II [[Aeromonas ichthiosmia]]
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