STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3EIN5NAC domain-containing protein. (324 aa)    
Predicted Functional Partners:
A0A0D3HWP7
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
  0.658
A0A0D3F140
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
  0.627
A0A0D3G244
Methyltransferase.
  
 
  0.619
A0A0D3ERY2
Uncharacterized protein.
  
 
  0.616
A0A0D3FQ33
AAI domain-containing protein.
  
 
  0.609
A0A0D3HJ20
Methyltransferase.
  
 
  0.609
A0A0D3HRH1
Phytocyanin domain-containing protein.
  
 
  0.604
A0A0D3EXJ8
Uncharacterized protein.
  
 
 0.599
A0A0D3FKL4
Uncharacterized protein.
  
 
  0.596
A0A0D3GH74
Uncharacterized protein.
  
 
   0.593
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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