STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3EL47Uncharacterized protein. (276 aa)    
Predicted Functional Partners:
A0A0D3GPT0
Uncharacterized protein.
    
   0.918
A0A0D3F7S6
Ribosomal_L16 domain-containing protein.
   
 0.805
A0A0D3FTC5
Ribosomal_L2_C domain-containing protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.765
A0A0D3GNF9
Uncharacterized protein.
   
 
 0.765
A0A0D3EY13
Uncharacterized protein.
   
 
 0.755
A0A0D3EZH5
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.754
A0A0D3FQJ2
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.735
A0A0D3H236
MRP-S28 domain-containing protein.
   
   0.728
A0A0D3HFA5
Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.721
A0A0D3F7P1
Uncharacterized protein.
   
 
 0.711
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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